|
NormalGating is the most important aspect of analysis
of complex data (like flow cytometric data). "Gating" refers to
the process of selecting a subset of the collected events for further
analysis. You can continue to gate subsets to generate further subsets,
until you have a collection of only the cells for which you want
a graphic display or statistic analyzed.@The process of gating simply
creates a new population. When you collect a sample and import it
into the workspace, FlowJo creates a "node" to represent that set
of events. When you set a gate to select a subset of the cells,
FlowJo creates a new "node"--i.e., a new population. Any operation
(graphic display, statistic, gating) that can be performed on the
sample can also be performed on a subset of tha sample--they are
all just populations!@FlowJo organizes this information as "tree"--much
like a family tree. The sample is the eldest generation (ancestor).
When you gate to create a subset, you generate a new node which
can be considered a "child" of the sample. The sample is the parent
of the new subset. A second subset created on the sample would be
another child of the sample; it is a "sibling" of the first subset.
You can then gate on the data in a child to generate yet another
generation ("grandchild")... Each new generation is indented another
level in the workspace window.@Naming subpopulations is important.
You cannot have siblings with the same names, lest confusion arise.
In general, you should avoid using duplicate names of subpopulations
within any given sample. You can get more information on naming
populations.@To create a subpopulation, you will draw any of several
different kinds of gates on a graphic plot of the parent population.
Once you have created the appropriate ombination of gates and statistics
on a sample, you can easily copy the entire analysis at once to
another sample, or to an entire set of samples.@Click on one of
the following topics related to drawing and manipulating gates:ÑDrawing
new gatesÑEditing existing gatesÑManually entering
gate boundariesÑCreating Quadrant gatesÑMagnetic GatesÑCopying
gates@Or, click here to go the overview on graph windows.
|