Plugins are apps that extend functionality of FlowJo™, which may be developed by 3rd-party developers or by the team at FlowJo, LLC.

To learn more, please see Installing a Plugin and to learn about the available plugins:

  • tSNE: reduce your data to 2 dimensions

  • Downsample: create a new gate which selects a limited number of data points/events from a sample or gated population

  • SPADE: visualize high-dimensional flow and mass cytometry data

  • CellOntology: determine the name or etiology of a gated cell/ population in question

 Make sure to check out the FlowJo Exchange to unleash your analysis using FlowJo as a platform and see other plugins available!