Changing Stain Names in FlowJo

Reconnect Derived Parameters

Derived parameters are created when running tSNE analysis as well as certain plugins. The parameters...

Simple Batching

Batching by sample is the easiest way to quickly generate the same figures for each sample in a grou...

Adding Keywords to a Batch Report

Batching by Panel & Batching Overlays

It is possible to batch overlayed populations using the batch by panel option. Batching by this opti...

Batching Using a Keyword/Value Series

Sometimes it is not simple to identify to FlowJo which samples need to be included in a batch report...

Using Iteration to Populate Layouts in Templates

Before saving a workspace as a template we need to inform FlowJo how to connect the figures in our l...

Create an Overlay of Two Different Plot types in a Layout

Want to overlay two different plot types? This can be done in the Layout Editor by removing the back...

QC and Organization

Our team will walk you through quality control and organization tips to help make your analysis easi...

FlowClean Plugin

Clean up your data with the FlowClean pluginDo you analyze a lot of samples? If so, data quality con...

flowAI Plugin Tutorial

This tool allows users to clean their data using a new algorithm developed by Gianni Monaco et al. a...

Using Groups in FlowJo

For more information, visit our documentation:https://docs.flowjo.com/flowjo/workspaces-and-samples/...

Layout Editor: Alignment Grid

When you have more than one object selected in the Layout Editor, you can align them relative to eac...

Sample Quality

For more information, visit our documentation:https://docs.flowjo.com/flowjo/workspaces-and-samples/...

Keywords

For more information, visit our documentation:https://docs.flowjo.com/flowjo/workspaces-and-samples/...

Compensation and Unmixing

Everything about traditional compensation and spectral unmixing in one spot.

AutoSpill: Improved Compensation for Cytometric Data

AutoSpill is a new algorithm for calculating spillover and producing a compensation matrix. It was d...

Spectral Compensation

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Traditional Compensation

For more information, visit our documentation:https://docs.flowjo.com/flowjo/experiment-based-platfo...

Applying a Compensation Matrix

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Compensation and Parameter Mismatch

Run into a compensation matrix or parameter mismatch error? This tutorial will show you how to fix t...

High Parameter Data Analysis

Utilize the tools in FlowJo to dive into high parameter data.

Computational Population Discovery

As the number of dimensions being interrogated rises, thorough identification and characterization o...

FlowSOM Plugin

FlowSOM is a state of the art clustering and visualization technique, which analyzes flow or mass cy...

Spectral Compensation

For more information, visit our documentation: https://docs.flowjo.com/flowjo/experiment-based-platf...