Using flow cytometry to track cell generations is now possible, thanks to the introduction of cell tracking dyes. FlowJo presents a graphical display and a table of data on each generation in the subset. This will provide you with information about how many cell divisions have occurred. In addition the FlowJo Proliferation Platform draws gates in order to separate each generation.

Start by clicking on the population to analyze and selecting the Proliferation Platform from the Workspace menu.

This brings up the Proliferation Platform.

Select a parameter on the X-axis.

The default number of peaks is 8, although it is important that the chosen number of peaks exceed the actual number of peaks in the data.

It is useful to initially calculate the model without constraints (adding constraints as necessary to obtain the best fit).

Calculate the model by clicking on the Calculate button.

Click a yellow arrow to cycle through samples.

Click the black dot to selects a sample.

Click the clipboard to copy table to clipboard.

The Division Index*, Proliferation Index*, and the %Divided* are explained below.

The better the model fit, the lower the Root Mean Square (RMS).

Gates dividing the generations can be created by clicking the Create Gates button. (Draws a gate halfway between each peak).

*Division Index Division indiex is the average number of divisions that a cell (that was present in the starting population) has undergone. For example, if half of the cells in the starting population divided, and the number of divisions that these cell underwent was 4, then the division index would be 2 (i.e., half of the cells exhibited 0 divisions, and half exhibited 4, so the average is 2).

*Proliferation Index is the average number of divisions that those cells which divided underwent. For example, if the average number of divisions for all the cells was 4, the Division Index would be 4.

*%Divided is the percentage of the cells of the original sample which divided (assuming that no cells died during the culture). For example, if half of the cells in the starting population have divided, the %Divided = 50%.

These statistics are related in the following way: Division Index = (Prolif. Index)(%Divided)

The Model Parameter Adjustments can be used to obtain a better fitting model.

As with all other platforms in FlowJo, the Proliferation Node can be applied to groups of samples by dragging.

Each generation can be analyzed separately (double click the generation number to open a graph).