The Graph Properties Window

The Specify Panel

The Annotate Panel

The Fonts Panel

These panels provide the interface to customize all of the aspect of the chart.
The Specify panel gives the specific details of the format of the graph. In the case of overlays, this panel shows the list of populations comprising the layers of the chart. Double-clicking a population here will mark it as a control sample, meaning that it will not cycle through the sample list during iteration. A control sample is locked to its original value.

The Annotate panel determines what additional annotations accompany the plot. These options will set the visibility of the legend, chart annotation, ancestry and multigraph. Only the initial (first) layer of an overlay will display gating information, so if you want to show gates, the layer whose gates you want visible, should be the first or base layer of the overlay.

The Fonts panel sets the text attributes of the axis labels, the numbers along the axes, and the statistics and names of gates on top of the graphs.

The Apply button will immediately apply edited characteristics to the selected chart.
The Save button will copy the current settings to your preferences, and will be used for future charts.

See also: Layouts, Line Tool, Text Tool, Grid Tool