To print a single FlowJo window, select the Print command from the File menu. This opens the dialog shown below from which you can fine tune your print preferences. When you click Print you will see the usual Print dialog offering choice of printer, number of copies and so on.

You can print the contents of the workspace window. Select Print from the File menu. The preview will show all samples, analyses, and statistics nodes currently visible in the the lower, sample pane of the workspace. Use the arrowhead buttons to move through the full length of the print job.
For more complex printing, use the Layout Editor. This tool provides options for easily creating reports with graphs, overlaid histograms, statistics and any amount of annotation and elaboration you desire. The reports are created by taking an example plot, overlay, statistic etc. and batch processing through all the samples you wish to display with the same arrangement. The resulting report can be rendered in several formats: new layout, PowerPoint slides, Quicktime movie, PDF, or Webpage report. In addition, you can print this report directly.

