General

• Changes to layout editor comparison platform graphs are maintained
• Templates open with "All Samples" group current
• CXP correction pref only applied to files with $SYS = CXP or $CYT = CXP
• Changed the number of colors for layout overlays that can be set in preferences from 12 to 36
• Proliferation Platform: Added EI (expansion index), RI (replication index), & SDD stats, re
• ordered stats in graph window
• Added menu / rightclick command "Copy To LE", works on single or multiple selection.
• Don't highlight (enable) transformation menus for uncompensated samples
• Allow different transformations for uncompensated parameters with different ranges (Important for CyTOF files)
• Allow reading (and skipping) layouts that are corrupted (and read other layouts that have not been affected)
• Comparison Node: Leave enough space to display Overton Percent Positive value. Also, recalculate when switching between univariate and multivariate views to ensure updated display
• Change percentile calculation for distributions where first channel of events IS percentile (was averaging percentile down)
• Maintain $PnR on floating point exports
• Fine tuning Comp Wizard for offscale parameter handling
• Calibration platform uses smoothed distributions for reference calculations
• Compensation Wizard provides helpful message when there is complete lack of shared parameters
• Handle duplicate indexed sort gate wells (gates now include all duplicated events rather than just the last one)
• Proliferation node allows setting Y axis in LE

Bug fixes:

• Recode Gallios FCS3.0 files to correct error in assignment of parameter stain names and recode scaling.
• Template workspace textboxes retain text
• Allow concatenation of samples with different stain names when prefs are to sort parm lists by stain
• Improve Comp Wizard performance & prevent a crash
• Reopening a workspace with a magnetic gate will show the gate in the moved position upon graph open
• Fixed template creation for layouts containing groups or grids of samples
• Backgate displays always show all dots for gated subsets (rather than preference
• defined setting for dot displays)
• XML workspaces, when reopened, do not show deleted samples in workspace
• Selecting "Remove Compensation" when graph window is front-most works
• Graphs in Layout Grids expand to fill the cells when hiding axis information
• When selecting multiple cells in Layout Grids and moving objects, the order of the objects is not inverted.
• Boolean gates that refer to gates that have "G#" in their names (like " gate") are properly shown in the display window when they are edited
• Multigraph overlay accommodates larger axis text (from prefs)
• Moving multiple objects within grids preserves order