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Copying analyses (gates, statistics,
etc.) from one sample to another is very easy: simply click on the
analysis (a gate, statistic, or population node), and drag it to the
destination. The node is added on to the destination node as a "child"
of the destination (i.e., it is applied to only those cells which
fall within the population you drop the analysis on).
You can drag entire trees around
this way, selecting children, parents, or multiple nodes. There
are specific rules for how these are taken around when you drag;
see the pages on dragging
and dropping.
Note that if you drag a subpopulation onto a population
which already has a subpopulation with the same name as that you
are copying, then FlowJo will replace the existing subpopulation.
This is more fully described in the page on replacing
nodes.
You can automate the process of applying analyses
to samples by using groups. You can add
analyses to a group; then every sample which belongs to the group
or is later added to the group gets those analyses. This is one
of the powerful batch analysis features of FlowJo. You may
view an example of group-based analysis.
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