Welcome to the Reference Manual for the PC version of FlowJo. Please click on an item below to start browsing, or use the search field to the left to find documentation on specific topics.

Are you new to FlowJo? Click here!

download our Basic Tutorial (25 pages, PDF) or try the Flash Version

Workspaces:

• Workspaces: an overview
• Reading samples into workspaces
• Groups
• Batch analysis
• Statistics
• Dragging and dropping (copying) analysis nodes & trees
• Compensation

Graphs and Displays:

• Graphic displays
• Gating: Creating new subpopulations

Special Analysis Platforms:

• Creating derived parameters (time, ratios, log < - > lin conversion)
• Compensation
• Calibrated Parameters (Quantitation of absolute molecules per cell)
• Kinetics
• Cell Cycle
• Proliferation Studies
• Display Transformation

Output:

• Layout Editor
• Copying graphs to other programs (generating publication-quality graphics)
• Tables
• Printing

Menus

Preferences (soon)

Tips and Techniques:

• Getting help
• Canceling operations that FlowJo is performing

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Usage Notes:

This program is in its early stages of development. So please make sure if you are beta testing, you back up all your data and report any errors in the program you encounter. This will ensure a good quality in the final release.

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Technical information:

• Windows system requirements
• Installation
• Reporting bugs or problems, making suggestions