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Version History
[5.2] April 7th, 2004
[5.1] Feb 23rd 2004
[5.03] Dec.11th 2003
[5.01] Nov. 6th 2003
[5.0] Oct 15th 2003
[Beta27] Oct. 10th 2003
[Beta24] Sep. 29th 2003
[Beta22] Sep. 18th 2003
[Beta20] Sep. 9th 2003
[Beta19] Sep. 3rd 2003
[Beta18] Aug. 29th 2003
[Beta17] Aug 25th 2003
[Beta16] Aug 20th 2003
[Beta15] Aug 12th 2003
[Beta13] Aug 5th 2003
*New in 5.2
Engine
problem with gating on LMD files (coulter)
crash in diva files
compensation errors on engine side
Better error reporting from Engine
ctrl c ctrl v keystrokes in LE
need different error if no dongle
transform doesn't work for axes
Can't graph sample with stat on a compensated parameter
Graph
transforming option bug
graphing options in graph window don't cause window refresh
outliers drawn inside contours
histogram refreshing misbehavior
deleting gates from GW doesn't delete them from WS
histo gating tool allowed on bivariate plots
statistics disclosure triangle
wrong graph type in options panel
polygon gate inverted
delete gate population doesn't update active gate option panel
duplication of gates by applying to all samples
diva gating problems
histogram axis labeled wrong
y axis scaling should be disabled for 2 dimensional plots
null pointer exception thrown when changing graph and Y axis type
changing transform prefs can yield incorrect graph
glitch in histogram Y axis, parameter and file specific
CDF on Y axis values and label are wrong
graph color change when auto scaling changed
histogram and CDF Y axis label gets reset but graph stays the
same
when a change in a gate is made and is updated for all graphs
it adds a new gate.
Layout
Screen update during batch operation leads to multiple screen
paints
histogram overlay legend problems (line style, coloring)
saved layouts too big in area
copy and paste from LE to powerpoint doesn't work
outliers in LE charts drawn on top
count stat nodes not calculated
Annotating layout editor graph with full path produces empty legend
Disable arrow buttons when no previous or next option
layout editor copying and pasting bug
Layout graphs and gates wrong
paste from one layout editor to another only displays placeholder
image copied from layout editor to external target is too large
opened layout editor may be off screen
all figs in Layout Editor, rather than selected figs, are pasted
to external target
text editor not working correctly in layout window
only histogram overlay works in layout window
scale to page problem
Other
data files from different vendors don't open in same workspace
platforms/define transformation
creating quad gate causes unnecessary plotting
Confirmation dialog's "Don't ask again" checkbox assumes
you selected yes
Preferences
hardware address field
prefs for stat text size in GW doesn't work
FlowJo not multi-user aware under XP
diva looks for nondiva transform pref settings
Table
column name field typing problems
custom column names ignored
Workspace
group overlapping doesn't work
adding folders with non-fcs data
duplicate files allowed in groups
gate frequencies decimal places
Change color of group not taking effect
deleting stat in ws doesn't delete stat description in graph window
Save As function from Workspace menu
nested gate nodes that are dragged to a population cannot be graphed
workspace saved with samples graphed as histograms get error when
graph type changed
statistic node error
data files in same directory as workspace should be found automatically
new workspaces come up on top of old ones
drag sample from desktop does not get added to selected group
drag sample from one workspace to another broken
count and freq stats not calculated when dragged to all samples
data related bug - gating on Cy7 PE
problem adding stats
removing samples from workspace doesn't decrement affected group
count
*New in 5.1
progress bar - works for most tasks throughout flowjo
* Workspace:
- diva data is supported in all modes.
- improved support for European characters in path names
- fixed clipboard support for pasting things into power point/excel
etc
- renaming top level node should be OK if sample name keyword
is used
- fixed group creating behavior (manual addition of samples)
* Graph Window:
- NOT option for gates wouldn't refresh dependent graph windows
and layouts
- transposing axes handles gates and gate freq's properly
- assigning a new compensation matrix forces an update of the
axes pulldown
* layout editor
- fixed improper scrolling/display of batched layouts
- fixed manual histogram Y axis scaling
*New in 5.03
* Known 'high priority' issues:
- Transforming compensated data
- No Mac/PC format convergence at this point
- speed and optimizations
- Microsoft Clipboard support for PowerPoint
- no support for directories with non-English characters in the
name path
- outliers drawn in wrong layer in LE and saved graph window/LE
dumps
*New Features
- Offline documentation has been added to the installer. This
will work for anyone
with no internet access. FlowJo will automatically look for the
documentation whenever
a help button is pressed.
- The installer will quit unless windows version is 2000, XP,
or 2003.
- better SVG compliance with Illustrator
- USB Dongle support
* Workspace:
- made dialogs less repetitive, added "don't ask again"
to most dialogs
- shift-clicking is fixed (for selecting consecutive nodes/samples)
- "adding stats" window is no longer "on top",
it is now same level as workspace
- added support for keyboard usage for most menu items and navigation
- dragging a folder into "all samples" will create a
group with that folder's name
- all nodes should recalculate immediately
- added stain mismatch dialog with a "don't ask again"
feature
- Improved group-analysis related operations
- Fixing workspaces whose data files have been moved is more functional
* Graph Window:
- live quad stats update
- Save as SVG, JPG, PNG works ('save as' file format must match
the one in preferences)
- Gate stats showing in Graph Window are now Frequency of Parent,
not Frequency.
- edit/copy gate and edit/paste gate menu items are functional
- background color works
- transformed axis labels (transformed graphs will come later)
- added the "not" option for gates (this will include
events OUTSIDE the gate)
* layout editor
- FlowJo will remember chart definition options
- fixed stat box length in batched layouts
- Remove overlay component without having to start over (right
click on legend, remove this layer)
- batching from custom group
- Histogram overlay Y Axis label will show counts
- show ancestry works
- Chart Definition window will remember settings
- added Undo action
* Table editor
- added support for custom keyword identification in preferences
(by default, FJ will use file name)
* Engine:
- copy protection via. USB dongle
please install the drivers for your Windows 2000/XP. You can get
them here:
http://www.ealaddin.com/support/hasp/enduser.asp
look for the "HASP Device Driver GUI Installation"
* Preferences:
- scientific notation works
- custom keyword can be used to identify samples in graph windows,
table editor, and layout editor
*New in 5.01
# Workspace:
made dialogs less repetitive, added "don't ask again"
to most dialogs
shift-clicking is fixed (for selecting consecutive nodes/samples)
"adding stats" window is no longer "on top",
it is now same level as workspace
added support for keyboard usage for most menu items and navigation
dragging a folder into "all samples" will create a group
with that folder's name
all nodes should recalculate immediately
# Graph Window:
live quad stats update
Save as SVG, JPG, PNG works ('save as' file format must match
the one in preferences)
Gate stats showing in Graph Window are now Frequency of Parent,
not Frequency.
edit/copy gate and edit/paste gate menu items are functional
background color works
transformed axis labels (transformed graphs will come later)
# layout editor
FlowJo will remember chart definition options
fixed stat box length in batched layouts
Remove overlay component without having to start over (right click
on legend, remove this layer)
batching from custom group
# Table editor
works.
# Engine:
copy protection via. USB dongle
please install the drivers for your Windows 2000/XP. You can get
them here:
http://www.ealaddin.com/support/hasp/enduser.asp
look for the "HASP Device Driver GUI Installation"
# Preferences:
scientific notation works
New in 5.0 / Beta27:
* new/fixed in b27:
Global:
update program: the last posted Beta installer has a "update.exe"
program.
If your computer is connected to the internet, this program will
update your
Beta FlowJo whenever a new version is posted. This reduces the
size and
length of the download.
Workspace:
- fixed the node selection bug
- fixed the %ile stat returning 0.3 bug
- added a "select none" item in the edit menu
- dragging a new node to a group will overwrite and update all
other
equivalent gates in that group
- right click menu added in workspace
- no more preference crashes.
- engine errors will come up for each required computation.
Layout:
- Improved SVG output, Adobe Illustrator will open them fine (and
modify)
- improved header/footer annotation and spacing
- alt-dragging graphs will duplicate them in Layout Editor
- right-click functions added in Layout Editor
- images can be inserted into the layout now, but only through
the Object
menu item
New in Beta24:
Update client:
the installer will put a shortcut to "update" to the
destination you specify. From future versions on, this program
will allow for smaller downloads to update the critical components
of flowjo (the .dll engine and flowjo.jar). This will reduce the
download size from 20MB to about 2.
Workspace:
- put restraints on gating space, gates will be 'caught' by the
boundries of GW
Layout:
- fill color in graphs
- frequencies in graphs
- histogram y axis
- histogram overlays fixed up
- batching fixed up
- control sample works
- saving batch settings
Graph Window:
- now able to delete populations from GW
- paste gate fixed
- saving as SVG fixed
- gate tinting fixed
- fixed elliptic gate movement
Engine:
- outliers added to pseudocolor, zebra, density plots
New in Beta22:
Workspace:
- fixed LMD data support (text2fcs)
- fixed LMD data support (winMDI)
- FlowJo "remembers" graph types in the workspace
Layout:
- fixed up overlays
- added ancestry
- fixed contour plots
Graph Window:
- transformation of graphs
- fixed contours
- made histograms nicer
- changed quad gate naming
New in Beta20:
WORKSPACE
- the blank graph problem
- compensation is possible of more than one sample at a time
- folders and files alike can be added to workspace by dragging
on "all samples"
- fixed FJ's inability to read HWA's on non-English versions of
windows
LAYOUT EDITOR
- batched layouts will display correct axes labels and the
stats will be calculated properly
- layout names are now saved
TABLE EDITOR
- table editor output can be copied to the clipboard and
pasted elsewhere
- table's are now named right
- added support for custom table header names
ENGINE
- annotated engine error codes
PREFERENCES
- specifying cell number per dot plot will work
New in Beta19:
WORKSPACE
- added "show time since last save" feature
- fixed Cyan data support
- added DiVa data support, but the parameters still need work
- fixed compensation. how to compensate -
http://www.flowjo.com/win/html/compensation.html
GRAPH WINDOW
- fixed histogram gate pinning
- space bar implemented as polygon gate abort key
- deleted populations will no longer show as 'gates' in graph
windows
New in Beta18:
WORKSPACE
- show $pns as reagent in group definition dialog
- make a new group, make a subpop, # samples in group gets flooded
from the all samples group
- it is possible to open multiple compensation definition dialogs
- users should be able to open our test data (http://www.flowjo.com/demo_data.html)
without a serial number
New in Beta17:
WORKSPACE
* some LSR data contains blank spaces in keywords. This
caused FJ to display
statistics as "0", this is now fixed.
* users should now be able to save workspaces anywhere (desktop,
user folders, etc..)
and open them, too ;)
LAYOUT EDITOR
* statistics would show as "*", this is now
fixed.
* pressing the print button in LE prints the layout with the scroll
bar (fixed)
New in Beta16:
*serial numbers
* When renaming a node in the workspace, delete key or arrow keys
are not enabled.
* edit/copy menu item does not work (table editor)
* 'forward scatter on X axis by default' preference does not work
* fixed histograms (triangle defect)
* saving workspaces: you should now be able to save workspaces
to flowjo's home directory (c:\program files\flowjo\), but the
data files can be anywhere on your computer
New in Beta15:
*Force recalc stats upon generating a table for all involved statistics
doesn't happen (TE assumes they are calc'ed)
*Rectangle line in LE: dotted doesn't work; text box: line weight
is the
same no matter what the choice
*Gate frequency shows in graphs in LE only if they're enabled
in GW prefs
*Some graph annotations exceed the length of the annotation box
(text
sticks out). I noticed this happens after batching - both in original
and batched layouts.
*Offset histograms needs improvement, %angle, and Y axis
*'Checked items remain locked' - in chart def, doesn't work. the
triangle
icon changes once clicked, but does not change back.
*Show gates/freq on graphs doesn't work
*Problems with printing more than one graph on the layout.
*Newly batched layouts show the first sample info over and over.
*'Forward scatter on X axis by default' in preferences doesn't
work
New in Beta13:
* added support for large (>300K events) multi parameter files
(now able to plot/gate etc)
* references to FCS files are relative, program will ask for missing
files if the
workspace is moved (relative to the data files) but it will ask
for each file ;)
* keyword-defined columns saved in preferences will show in a
new workspace
regardless of data having those keywords
* $FIL will now only show the file name, not the whole path.
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