scRNA-Seq

  • Drawn together: Remodeling the puzzling mechanisms of Idiopathic pulmonary fibrosis

    Idiopathic pulmonary fibrosis (IPF), a chronic lung disease claiming approximately 30,000 to 40,000 victims every year, is characterized by rapid lung degeneration and a dismal median survival of 3-5 years after diagnosis. Despite a clear need for treatments that can improve this prognosis, there are currently only two therapies available for the treatment of IPF. While these two therapies have been shown to slow disease progression, neither treatment can actually halt lung degeneration or reverse lung tissue remodeling.

    Mar 26, 2019   |   scRNA-Seq ,   Flow Cytometry

  • Need To Analyze Your Single-Cell RNASeq Data?

    Having trouble analyzing your single-cell RNAseq data? File formats got you bogged down? Get away from the format wars- SeqGeq can import just about any gene expression file. CSV, TSV, TXT, TAB, MTX, or H5 (AKA HDF5 from 10X Genomics) are just some of the growing number of file formats that SeqGeq currently reads

    Jul 02, 2018   |   scRNA-Seq

  • Dimensionality Reduction with the t-Distributed Stochastic Neighbor Embedding (tSNE) Algorithm

    The tSNE algorithm computes two new derived parameters from a user-defined selection of cytometric parameters. These tSNE-generated parameters are optimized in such a way that data points that were close together in the raw high-dimensional data remain close together in the reduced data space.

    Aug 03, 2017   |   scRNA-Seq ,   Flow Cytometry