Versions

Windows

1.4.0

Released 04-20-18

Highlights

  • Introducing a Clustering Platform - Now available in the Discovery band of the Workspace, which allows researchers to run KMeans clustering and KNearest-Neighbors (KNN) classification.

  • Genes illustrated in the Pivot Window (i.e. Gene View) can now be selected and filtered in the top left hand corner of the Graph Window. This allows researchers to focus only on parameters of interest when gating in Gene View.

Improvements

  • PCA now contains options to normalize and log transform parameters used for the dimensionality reduction, greatly improving the resulting clustering.

  • Optimizations to the tSNE algorithm to increase efficiency of the calculation.

  • Support for sparse expression matrix ".st" file types.

  • Support for synthetic parameters, such as GeneSets, in multigraph color maps.

  • Release notification mechanism to let users know when the next release becomes available. (Active for releases post SeqGeq v1.4.0)

Fixes

  • Adjustments to p-value calculations in volcano plots.

  • Axes labels for Gene View plots in the Layout Editor can now be edited from the Graph Definition window.

If you have any questions or comments regarding the SeqGeq platform we greatly appreciate any feedback.

1.3.0

Released 03-05-18

Highlights

  • Introducing the Geneset Enrichment platform accessible by right clicking on a gene set.

  • Multigraph Color Mapping  feature in "Multigraph Overlay" section of Layout Editor plot right click drop down menu.

  • New multi-omics demo data set for Systemic Lupus Erythematosus (SLE) provided by Accelerating Medicines Partnership consortium.

  • Proxy credentials dialog now available when no internet connection is detected.

1.2

Released 01-23-18

1.1.0

Released 12-11-17
  • Enhanced performance
  • Support for HDF5 (.h5) formatted data files
  • Color mapping key for plots in layouts
  • Support for Plugins
  • New and improved demo data file for Melanoma data matrix from Tirosh, et al.
  • Full Release Notes

1.0.1

Released 07-03-17
  • Significant speed Improvements in the Dimensionality Reduction Platform

  • Many issues found in SeqGeq 1.0 have been fixed

  • Full Release Notes

1.0

Released 03-29-17

Mac

1.4.0

Released 04-20-18

Highlights

  • Introducing a Clustering Platform - Now available in the Discovery band of the Workspace, which allows researchers to run KMeans clustering and KNearest-Neighbors (KNN) classification.

  • Genes illustrated in the Pivot Window (i.e. Gene View) can now be selected and filtered in the top left hand corner of the Graph Window. This allows researchers to focus only on parameters of interest when gating in Gene View.

Improvements

  • PCA now contains options to normalize and log transform parameters used for the dimensionality reduction, greatly improving the resulting clustering.

  • Optimizations to the tSNE algorithm to increase efficiency of the calculation.

  • Support for sparse expression matrix ".st" file types.

  • Support for synthetic parameters, such as GeneSets, in multigraph color maps.

  • Release notification mechanism to let users know when the next release becomes available. (Active for releases post SeqGeq v1.4.0)

Fixes

  • Adjustments to p-value calculations in volcano plots.

  • Axes labels for Gene View plots in the Layout Editor can now be edited from the Graph Definition window.


1.3.0

Released 03-05-18

Highlights

  • Introducing the Geneset Enrichment platform accessible by right clicking on a gene set.

  • Multigraph Color Mapping  feature in "Multigraph Overlay" section of Layout Editor plot right click drop down menu.

  • New multi-omics demo data set for Systemic Lupus Erythematosus (SLE) provided by Accelerating Medicines Partnership consortium.

  • Proxy credentials dialog now available when no internet connection is detected.

1.2

Released 01-23-18

1.1.0

Released 12-11-17
  • Enhanced performance
  • Support for HDF5 (.h5) formatted data files
  • Color mapping key for plots in layouts
  • Support for Plugins
  • New and improved demo data file for Melanoma data matrix from Tirosh, et al.
  • Full Release Notes

1.0.1

Released 07-03-17
  • Significant speed Improvements in the Dimensionality Reduction Platform

  • Many issues found in SeqGeq 1.0 have been fixed

  • Full Release Notes

1.0

Released 03-29-17