The leading platform for superior analysis.
Get Your Flow On

What’s new with FlowJo?

aspect ratio pixel

For the option to view closed captions, view this video here. 

We’ve designed FlowJo™ Software version 10.10 to help you take your experiments further with more tools and updated technology! Enjoy new features such as BD SpectralFX unmixing, advanced scaling preferences and more!

  • Data visualization: Create spectral plots for selected detectors and populations and compare populations using spectral plots with Spectral Population Viewer
  • BD SpectralFX™ Unmixing: Perform system-aware spectral unmixing on spectral data from BD FACSDiscover™ cytometers
  • NxN plot parameter mouseover: Display parameter combinations on NxN plots for easier viewing.
  • Advanced Scaling Preferences: Define data-driven, per-cytometer scaling defaults to more easily set transform properties.
  • MEM (Marker Enrichment Modeline) score tables: Export MEM population names in a tabular format
  • Added functionality with ClusterExplorer: 
    • Non-cluster populations can now be visualized in the ClusterExplorer
    • Clusters can be re-ordered within the heatmap view
    • Heatmap columns can be re-ordered or hidden
    • Expanded heatmap window
  • Copy Transforms: In the compensation matrix editor users can now copy the transform from one compensation matrix to another, allowing per parameter transforms to be easily applied to another data set.
  • Computational population discovery: Create gates for computationally-defined populations with HyperFinder in order to sort, compare and validate complex populations.

We hope you have fun exploring these new features which are available to you today when you download the latest version of FlowJo™ Software v10.10.

Features and Benefits

FlowJo™ Software is the leading platform for single-cell flow cytometry analysis that helps you interpret your data quickly and effectively with accessible features for immunophenotyping, cell cycle analysis, proliferation, kinetics studies, quantitative population comparison, high-dimensional analysis and more.

COMPATIBILITY. Single solution for flow analysis. Compatible with all data files from all acquisition software packages and cytometers.

EASY TO USE! Intuitive drag-and-drop analysis and publication-quality graphics.

ADVANCE DATA ANALYSIS. Models for advanced data analysis. Algorithmic analysis and fast calculation speeds.

SAVE TIME! Plugin architecture with fast updates with novel algorithms. Visualization tools to minimize time to insight.

BD TOTAL SOLUTION. End-to-end experiment capabilities and 45+ years of experience in flow cytometry analysis.


Take your research wherever you go with an instrument-agnostic platform that accepts all FCS file types.

Use our intuitive drag-and-drop interface to seamlessly run your trailblazing analysis in or outside the lab.

FlowJo meets FlowJo Portal

Introducing a new way to manage your FlowJo licenses! With FlowJo Portal, enjoy the flexibility to sign in to FlowJo wherever you choose.

Learn More

BD® Research Cloud

Tackle your flow cytometry experiments from panel design to workflow collaboration.

Learn More

FlowJo Exchange

Innovative plugins and tools to upgrade your FlowJo analysis.

Embrace Exchange

FlowJo University

Take your FlowJo knowledge to the next level with our FJU resources.

Become a FlowJo master