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Production Release

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Mac Release Notes (1.4.0):

Highlights

  • Introducing a Clustering Platform - Now available in the Discovery band of the Workspace, which allows researchers to run KMeans clustering and KNearest-Neighbors (KNN) classification.

  • Genes illustrated in the Pivot Window (i.e. Gene View) can now be selected and filtered in the top left hand corner of the Graph Window. This allows researchers to focus only on parameters of interest when gating in Gene View.

Improvements

  • PCA now contains options to normalize and log transform parameters used for the dimensionality reduction, greatly improving the resulting clustering.

  • Optimizations to the tSNE algorithm to increase efficiency of the calculation.

  • Support for sparse expression matrix ".st" file types.

  • Support for synthetic parameters, such as GeneSets, in multigraph color maps.

  • Release notification mechanism to let users know when the next release becomes available. (Active for releases post SeqGeq v1.4.0)

Fixes

  • Adjustments to p-value calculations in volcano plots.

  • Axes labels for Gene View plots in the Layout Editor can now be edited from the Graph Definition window.


Windows Release Notes (1.4.0):

Highlights

  • Introducing a Clustering Platform - Now available in the Discovery band of the Workspace, which allows researchers to run KMeans clustering and KNearest-Neighbors (KNN) classification.

  • Genes illustrated in the Pivot Window (i.e. Gene View) can now be selected and filtered in the top left hand corner of the Graph Window. This allows researchers to focus only on parameters of interest when gating in Gene View.

Improvements

  • PCA now contains options to normalize and log transform parameters used for the dimensionality reduction, greatly improving the resulting clustering.

  • Optimizations to the tSNE algorithm to increase efficiency of the calculation.

  • Support for sparse expression matrix ".st" file types.

  • Support for synthetic parameters, such as GeneSets, in multigraph color maps.

  • Release notification mechanism to let users know when the next release becomes available. (Active for releases post SeqGeq v1.4.0)

Fixes

  • Adjustments to p-value calculations in volcano plots.

  • Axes labels for Gene View plots in the Layout Editor can now be edited from the Graph Definition window.

If you have any questions or comments regarding the SeqGeq platform we greatly appreciate any feedback.