FlowJo Version 11.1.1 Release notes

Released 2.24.2026

Version 11.1.1 is a point release intended to correct a handful of issues that are impacting users in advance of the feature driven 11.2 release intended for later this year.

Bug Fixes

  • FlowJo correction matrices can be applied to acquisition defined and imported matrices.  Previously, the correction matrix only applied to matrices created in FlowJo.
  • Multi-select of populations and statistics in Tables is improved. Previously statistics were only being added for the top population.
  • Virtually Concatenated Populations (VCP) stats error corrected. Previously, if a VCP was added to Reports, the statistics would reflect the Experiment Data group even if a sub-population was selected.
  • Boolean Gates stats error corrected.  Previously, the frequency of parent for OR gates was being calculated as the frequency of only one contributing population.
  • Support added for file paths with accent marks.
  • Padding on displayed p-values in Charts has been improved to prevent obscuration of the chart.


Known high priority Issues

File operation

  • Bigfoot derived FCS files are displayed incorrectly with a reduced scale

MetaData manager

  • Parameters with the same $PnN but different $PnS will show an incorrect warning label indicating they are duplicates.

Unmixing

  • In the unmixing wizard, NxN plots for BD FACSDiscover S8 data can have misleading labels

Hierarchy

  • Editing the group criteria of a group created by dragging in a folder produces no effect.
  • See-All populations has been temporarily disabled to improve functionality.

Graph Window

  • A zero event population shown on a histogram plot will turn the whole plot blue instead of white.
  • When in VCP mode, population statistics are not updated after deleting a sample from a group.  

Reports

  • Select All + Copy + Paste fails